# protocol params
numsteps        1000

# initial config
coordinates     alanin.pdb
temperature     300K
seed            12345

# output params
outputname      /tmp/alanin
binaryoutput    no

# integrator params
timestep        1.0

# force field params
structure       alanin.psf
parameters      alanin.params
exclude         scaled1-4
1-4scaling      1.0
switching       on
switchdist      8.0
cutoff          12.0
pairlistdist    13.5
stepspercycle   20
